before tearing apart the PCB, I recommend you remove your PCB, put on the input wing with the jacks and test the inputs there. You can even use the signals on the sockets with the wing on, if you prefer pins to jacks: they are already AC-coupled. If that fixes the issue then most likely what you are missing is the capacitors I described above.
What pickups are you using ? Is their output AC- or DC-coupled?