Hmmm I am confused about you using jack2 and a2j ... Are you running them on the host?
The Faust programs use hw:1,0,0 by default, which is normally the first USB midi device you plug into Bela itself. If you want to use the one that shows up on the host, that one is hw:0,0,0 . To use that you should modify readFrom(0) and writeTo(0) (which use the default) with readFrom("hw:0,0,0") and writeTo("hw:0,0,0") .